This is the supplementary website for the manuscript titled "Transcriptomics of Bronchoalveolar Lavage Cells Identifies New Molecular Endotypes of Sarcoidosis", where you can download the data, paper supplement files, supervised analysis results, unsupervised analysis results and R codes we used to generate the figures in the manuscript.

You can also download all the files by clicking "View On GitHub" under the title, which will lead you to the github repo download, which has a comprehensive explanations of all the downloaded files.

Paper Supplement

Supplementary files for the paper include:

• Supplemental Table E1 [.xlsx]
• Supplemental Table E2 [.xlsx]
• Supplemental Table E3 [.xlsx]

Supervised Analysis

Supplementary files for the supervised analysis include:

• Lists of genes associated with clinical traits, phenotype and disease severity [.zip]
• Lists of overalpped genes between any two lists (Figure 2a) [.zip]
• Pathway enrichment analysis of the genes associated with clinical traits (Figure 2b) [.zip]
• Genes associated with FEV1% predicted and FVC% predicted in both GRADS and Freiburg cohorts [.zip]

Unsupervised Analysis

• Assignment of genes to the 48 identified gene modules [.xls]
• Pathway enrichment analysis results for each module [.zip]

Support or Contact

Having trouble or questions with the files? Check out our github repo for support. You can also send us messages through Issues and we’ll help you sort it out.